INFN is Biophys 2022
The workshop of the INFN IS BioPhys brings together the scientific community working around the themes of the Iniziativa Specifica (IS) BioPhys of the INFN. The focus is on the advancements in biological physics, complex systems and computational approaches in connection, but not limited to the scientific activities of BioPhys.A number of short talks will be selected among those submitted by registered participants encompassing senior and especially young scientists. Vincenzo Barone (SNS) has also accepted to give a perspective presentation. Besides, other invited speakers include profs. Lucia Banci (Università di Firenze), Velia Minicozzi (Università di Roma Tor Vergata), Francesco Raimondi (Scuola Normale Superiore).
Scientific and Organizing Committee
- Vincenzo Barone - Scuola Normale Superiore
- Giuseppe Brancato - Scuola Normale Superiore
- Mario Nicodemi - Università di Napoli Federico II, MDC Berlin
- Monica Sanna - Scientific secretary , Scuola Normale Superiore
Invited Speakers
- Lucia Banci - Università di Firenze
- Vincenzo Barone - Scuola Normale Superiore
- Velia Minicozzi- Università di Roma Tor Vergata
- Francesco Raimondi - Scuola Normale Superiore
Programme
14 SEPTEMBER 2022
14.30 Registration
14.50 Opening
SESSION I
Chair session Michele Caselle - Università di Torino
15.00 Velia Minicozzi - Università di Roma Tor Vergata
Simulations meet experiments
16.00 Alberto Amaduzzi - Università Bologna
Data driven dynamical model pedestrian flows inVenice
16.20 Federico Bellisardi - Università di Bologna
Data driven dynamical model for traffic flows on a road network
16.40 Coffee Break
17.10 Silvia Lazzardi - Università di Torino
Emergent Statistical Laws in Single-Cell Transcriptomic Data
17.30 P. Bonifazi - IKERBASQUE: The Basque Foundation for Science, Bilbao
Linking hubs, embryonic neurogenesis, transcriptomics and diseases in human brain networks
17.50 Emanuele Paci - Università di Bologna
Models for molecular biophysical data: hydrogen-deuterium exchange probed by mass spectrometry
18.10 Letizia Pizzini - Università di Torino
Topic Modeling to analyze spatial transcriptomic data from Allen Human Brain Atlas
15 SEPTEMBER 2022
SESSION II
Chair session Giuseppe Brancato - Scuola Normale Superiore
9.30 Lucia Banci - Università di Firenze
Metal trafficking in the cell: combining the atomic resolution with the cellular dimension
10.30 Luca Sagresti - Scuola Normale Superiore
Adaptive stochastic model for solvent exchange around aqua ions
10.50 Tomas Scagliarini - Università di Bari
Quantifying Dynamical High-Order Interdependencies From the O-Information: An Application to Neural Spiking Dynamics
11.10 Coffee Break
11.40 Mattia Conte - Università di Napoli Federico II
Physical mechanisms shaping chromosome spatial organization
12.00 Antonio De Candia - Università di Napoli Federico II
Critical behaviour of the stochastic Wilson Cowan model in 2D
12.20 Andrea Esposito - Università di Napoli Federico II
Polymer physics reveals a combinatorial code linking 3D chromatin architecture to 1D chromatin states
12.40 Pietro Faccioli - Università di Trento
Can theoretical physics help discover drugs for untreatable diseases?
SESSION III
Chair session Armando Bazzani - Università di Bologna
15.00 Vincenzo Barone - Scuola Normale Superiore
A Four-Pillar Approach for Reconciling Accuracy and Interpretability
16.00 Alfonso Ferretti - Scuola Normale Superiore
The effects of Concentration on Ion Transport through Carbon Nanotubes: A Molecular Dynamics Study
16.20 Andrea Gamba - Politecnico di Torino
Optimality in self-organized molecular sorting
16.40 Coffee Break
17.10 Simona Bianco - Università di Napoli Federico II
Polymer physics models of chromosome structure and function
17.30 Marta Biondo - Università di Torino
Identification of the source of extrinsic noise from the stochastic dynamics of gene expression
17.50 Federico Capoani - Università di Bologna
Adiabatic invariance, resonant islands and separatrix crossing in a Lotka-Volterra model
18.10 Federico Billeci - Università di Torino
Statistical models for chromatin contacts inference
16 SEPTEMBER 2022
SESSION IV
Chair session Velia Minicozzi - Università di Roma Tor Vergata
9.20 Francesco Raimondi - Scuola Normale Superiore
Data-driven discovery and exploitation of biological signaling mechanisms
10.20 Andrea Maria Chiariello - Università di Napoli Federico II
Higher order chromatin organization is driven by phase-separation through PHF13: microscopy experiments and polymer models
10.40 Giulio Colombini - Università di Bologna
The Synchronisation Phase Transition in Networks of Model Neurons
11.00 Coffee Break
11.30 Silvia Scarpetta - Università di Salerno
Critical dynamics during human sleep
11.50 Guido Tiana - Università di Milano
The complex conformational dynamics of the genome
12.10 Filippo Valle - Università di Torino
Multi-omics topic modeling for Cancer Subtype Classification
12.30 Antonio Francesco Zirattu - Università di Torino
The effect of a linear feedback mechanism in a homeostasis model